acquifer.ij

Class Utils

Object

acquifer.ij.Utils

public class Utils
extends Object

Utilitary functions when working in ImageJ/Fiji.

Constructor Summary

Constructors

Constructor and Description
Utils()

Method Summary

Modifier and Type	Method and Description
static ij.io.FileInfo	getTiffInfos(String imagePath) Read the tiff metadata from a tif file header using ImageJ built-in functionality (TiffDecoder).
static int[]	getWidthHeightBitDepthFromInfo(ij.io.FileInfo tiffMetadata) Read an image dimensions [width, height, bitDepth] from the header of a tiff image.
static int[]	getWidthHeightBitDepthFromTiff(String imagePath)
static boolean	ijVersionEqualOrAbove(String version) Check if current ImageJ version is equal or above the given version.
static boolean	ijVersionLessThan(String version) Check if current ImageJ version is smaller than given version.
static <T> void	printArray(Collection<T> collection) Print each elements of a collection on a new-line for better readability.
static void	printArray(Object[] array) Print each elements of an array on a new-line for better readability.
static void	setCalibrationPixelSizeXY(ij.ImagePlus imp, ij.io.FileInfo tiffMetadata) Populate the pixelWidth and pixelHeight of an ImagePlus based on tiffMetadata.

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Utils

public Utils()

Method Detail

ijVersionEqualOrAbove

public static boolean ijVersionEqualOrAbove(String version)

Check if current ImageJ version is equal or above the given version.

ijVersionLessThan

public static boolean ijVersionLessThan(String version)

Check if current ImageJ version is smaller than given version.

printArray

public static void printArray(Object[] array)

Print each elements of an array on a new-line for better readability.
Elements are printed to the imageJ log window.

printArray

public static <T> void printArray(Collection<T> collection)

Print each elements of a collection on a new-line for better readability.
Elements are printed to the imageJ log window.

getTiffInfos

public static ij.io.FileInfo getTiffInfos(String imagePath)
                                   throws IOException

Read the tiff metadata from a tif file header using ImageJ built-in functionality (TiffDecoder).

Throws:

IOException

getWidthHeightBitDepthFromTiff

public static int[] getWidthHeightBitDepthFromTiff(String imagePath)
                                            throws IOException

Throws:

IOException

getWidthHeightBitDepthFromInfo

public static int[] getWidthHeightBitDepthFromInfo(ij.io.FileInfo tiffMetadata)

Read an image dimensions [width, height, bitDepth] from the header of a tiff image.

setCalibrationPixelSizeXY

public static void setCalibrationPixelSizeXY(ij.ImagePlus imp,
                                             ij.io.FileInfo tiffMetadata)

Populate the pixelWidth and pixelHeight of an ImagePlus based on tiffMetadata.